Test results for 5.0.3 [failed]

 ========================================
=============================
FAILED TEST SUMMARY
---------------------------------------------------------------------
Test for buffering in core functions with implicit flush off [tests/func/008
.phpt]
Convert warnings to exceptions [tests/lang/038.phpt]
Bug #29944 (function defined in switch crashes PHP) [tests/lang/bug29944.php
t]
Bug #22836 (returning references to NULL) [Zend/tests/bug22836.phpt]
Bug #28444 (Cannot access undefined property for object with overloaded prop
erty access) [Zend/tests/bug28444.phpt]
Test 3: Exception Test [ext/dom/tests/dom003.phpt]
iconv stream filter [ext/iconv/tests/iconv_stream_filter.phpt]
Bug #29992 (foreach by reference corrupts the array) [ext/standard/tests/arr
ay/bug29992.phpt]
Bug #20382 (strtotime ("Monday", $date) produces wrong result on DST changeo
ver) [ext/standard/tests/time/bug20382.phpt]
Bug #26614 (CDATA sections skipped on line count) [ext/xml/tests/bug26614.ph
pt]
 ========================================
=============================


 ========================================
=============================
TEST RESULT SUMMARY
---------------------------------------------------------------------
Exts skipped    :   69
Exts tested     :   14
---------------------------------------------------------------------

Number of tests : 1291               610
Tests skipped   :  681 (52.7%) --------
Tests warned    :    0 (0.0%) (0.0%)
Tests failed    :   10 (0.8%) (1.6%)
Tests passed    :  600 (46.5%) (98.4%)
---------------------------------------------------------------------
Time taken      :   75 seconds
 ========================================
=============================

 ========================================
=============================
FAILED TEST SUMMARY
---------------------------------------------------------------------
Test for buffering in core functions with implicit flush off [tests/func/008
.phpt]
Convert warnings to exceptions [tests/lang/038.phpt]
Bug #29944 (function defined in switch crashes PHP) [tests/lang/bug29944.php
t]
Bug #22836 (returning references to NULL) [Zend/tests/bug22836.phpt]
Bug #28444 (Cannot access undefined property for object with overloaded prop
erty access) [Zend/tests/bug28444.phpt]
Test 3: Exception Test [ext/dom/tests/dom003.phpt]
iconv stream filter [ext/iconv/tests/iconv_stream_filter.phpt]
Bug #29992 (foreach by reference corrupts the array) [ext/standard/tests/arr
ay/bug29992.phpt]
Bug #20382 (strtotime ("Monday", $date) produces wrong result on DST changeo
ver) [ext/standard/tests/time/bug20382.phpt]
Bug #26614 (CDATA sections skipped on line count) [ext/xml/tests/bug26614.ph
pt]
 ========================================
=============================


 ========================================
====================================
====
/usr/local/src/php-5.0.3/tests/func/008.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
'foo1'

'foo2'
---- ACTUAL OUTPUT

---- FAILED

 ========================================
====================================
====
001- 'foo1'
003- 'foo2'
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/tests/lang/038.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
string(15) "Error2Exception"
string(5) "fopen"
===DONE===
---- ACTUAL OUTPUT
string(15) "Error2Exception"
string(15) "Error2Exception"
===DONE===
---- FAILED

 ========================================
====================================
====
002+ string(15) "Error2Exception"
002- string(5) "fopen"
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/tests/lang/bug29944.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
1
===DONE===
---- ACTUAL OUTPUT

---- FAILED

 ========================================
====================================
====
001+
001- 1
002- ===DONE===
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/Zend/tests/bug22836.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
string(3) "foo"
'foo'

Notice: Undefined variable:  a in %s on line %d

Strict Standards: Only variable references should be returned by reference i
n %s on line %d
---- ACTUAL OUTPUT
string(3) "foo"
'foo'

Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/bug228
36.php on line 7

Strict Standards: Only variable references should be returned by reference i
n /usr/local/src/php-5.0.3/Zend/tests/bug22836.php on line 7
string(3) "foo"
'foo'

Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/bug228
36.php on line 7

Strict Standards: Only variable references should be returned by reference i
n /usr/local/src/php-5.0.3/Zend/tests/bug22836.php on line 7
NULL
'foo'

Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/bug228
36.php on line 7
NULL
'foo'

Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/bug228
36.php on line 7
NULL
'foo'

Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/bug228
36.php on line 7
NULL
'foo'

Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/bug228
36.php on line 7
NULL
'foo'

Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/bug228
36.php on line 7
NULL
'foo'

Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/bug228
36.php on line 7
---- FAILED

 ========================================
====================================
====
013+ NULL
013- string(3) "foo"
017+ NULL
018+ 'foo'
018- Strict Standards: Only variable references should be returned by refere
nce in %s on line %d
019- string(3) "foo"
020+ Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/b
ug22836.php on line 7
021+ NULL
022+ 'foo'
023+
024+ Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/b
ug22836.php on line 7
025+ NULL
026+ 'foo'
027+
028+ Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/b
ug22836.php on line 7
029+ NULL
030+ 'foo'
031+
032+ Notice: Undefined variable:  a in /usr/local/src/php-5.0.3/Zend/tests/b
ug22836.php on line 7
033+ NULL
023-
024- Strict Standards: Only variable references should be returned by refere
nce in %s on line %d
025- string(3) "foo"
026- 'foo'
027-
028- Notice: Undefined variable:  a in %s on line %d
029-
030- Strict Standards: Only variable references should be returned by refere
nce in %s on line %d
031- string(3) "foo"
032- 'foo'
033-
034- Notice: Undefined variable:  a in %s on line %d
035-
036- Strict Standards: Only variable references should be returned by refere
nce in %s on line %d
037- string(3) "foo"
038- 'foo'
039-
040- Notice: Undefined variable:  a in %s on line %d
041-
042- Strict Standards: Only variable references should be returned by refere
nce in %s on line %d
043- string(3) "foo"
044- 'foo'
045-
046- Notice: Undefined variable:  a in %s on line %d
047-
048- Strict Standards: Only variable references should be returned by refere
nce in %s on line %d
049- string(3) "foo"
050- 'foo'
051-
052- Notice: Undefined variable:  a in %s on line %d
053-
054- Strict Standards: Only variable references should be returned by refere
nce in %s on line %d
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/Zend/tests/bug28444.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
object(Object)#%d (1) {
["x"]=>
int(2)
}
int(2)
int(3)
Overloaded::__set(y,3)
int(3)
Overloaded::__get(y)
int(3)
Overloaded::__set(z,Object id #3)
object(Object)#%d (1) {
["x"]=>
int(4)
}
Overloaded::__get(z)
int(4)
Overloaded::__get(z)
int(5)
Overloaded::__get(z)
int(6)
===DONE===
---- ACTUAL OUTPUT
object(Object)#2 (1) {
["x"]=>
int(2)
}
int(2)
int(3)
Overloaded::__set(y,3)
int(3)
Overloaded::__get(y)
int(3)
Overloaded::__set(z,Object id #3)
object(Object)#3 (1) {
["x"]=>
int(4)
}
Overloaded::__get(z)
int(4)
Overloaded::__get(z)
int(5)

Fatal error: Cannot access undefined property for object with overloaded pro
perty access in /usr/local/src/php-5.0.3/Zend/tests/bug28444.php on line 45
---- FAILED

 ========================================
====================================
====
020+
021+ Fatal error: Cannot access undefined property for object with overloade
d property access in /usr/local/src/php-5.0.3/Zend/tests/bug28444.php on lin
e 45
020- Overloaded::__get(z)
021- int(6)
022- ===DONE===
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/ext/dom/tests/dom003.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
--- Catch exception with try/catch
object(DOMException)#%d (6) {
["message:protected"]=>
string(23) "Hierarchy Request Error"
["string:private"]=>
string(0) ""
["file:protected"]=>
string(%d) "%s/ext/dom/tests/dom003.php"
["line:protected"]=>
int(8)
["trace:private"]=>
array(0) {
}
["code"]=>
int(3)
}
--- Don't catch exception with try/catch

Fatal error: Uncaught exception 'DOMException' with message 'Hierarchy Reque
st Error' in %sdom003.php:%d
Stack trace:
#0 {main}
thrown in %sdom003.php on line %d
---- ACTUAL OUTPUT
--- Catch exception with try/catch
object(DOMException)#3 (6) {
["message:protected"]=>
string(23) "Hierarchy Request Error"
["string:private"]=>
string(0) ""
["file:protected"]=>
string(49) "/usr/local/src/php-5.0.3/ext/dom/tests/dom003.php"
["line:protected"]=>
int(8)
["trace:private"]=>
array(1) {
[0]=>
array(6) {
["file"]=>
string(49) "/usr/local/src/php-5.0.3/ext/dom/tests/dom003.php"
["line"]=>
int(8)
["function"]=>
string(11) "appendChild"
["class"]=>
string(10) "DOMElement"
["type"]=>
string(2) "->"
["args"]=>
array(1) {
[0]=>
object(DOMElement)#2 (0) {
}
}
}
}
["code"]=>
int(3)
}
--- Don't catch exception with try/catch

Fatal error: Uncaught exception 'DOMException' with message 'Hierarchy Reque
st Error' in /usr/local/src/php-5.0.3/ext/dom/tests/dom003.php:13
Stack trace:
#0 /usr/local/src/php-5.0.3/ext/dom/tests/dom003.php(13): DOMElement->append
Child(Object(DOMElement))
#1 {main}
thrown in /usr/local/src/php-5.0.3/ext/dom/tests/dom003.php on line 13
---- FAILED

 ========================================
====================================
====
012+   array(1) {
013+     [0]=>
014+     array(6) {
015+       ["file"]=>
016+       string(49) "/usr/local/src/php-5.0.3/ext/dom/tests/dom003.php"
017+       ["line"]=>
018+       int(8)
019+       ["function"]=>
020+       string(11) "appendChild"
021+       ["class"]=>
022+       string(10) "DOMElement"
012-   array(0) {
013-   }
014-   ["code"]=>
015-   int(3)
016- }
017- --- Don't catch exception with try/catch
018-
019- Fatal error: Uncaught exception 'DOMException' with message 'Hierarchy 
Request Error' in %sdom003.php:%d
020- Stack trace:
021- #0 {main}
022-   thrown in %sdom003.php on line %d
023+       ["type"]=>
024+       string(2) "->"
025+       ["args"]=>
026+       array(1) {
027+         [0]=>
028+         object(DOMElement)#2 (0) {
029+         }
030+       }
031+     }
032+   }
033+   ["code"]=>
034+   int(3)
035+ }
036+ --- Don't catch exception with try/catch
037+
038+ Fatal error: Uncaught exception 'DOMException' with message 'Hierarchy 
Request Error' in /usr/local/src/php-5.0.3/ext/dom/tests/dom003.php:13
039+ Stack trace:
040+ #0 /usr/local/src/php-5.0.3/ext/dom/tests/dom003.php(13): DOMElement->a
ppendChild(Object(DOMElement))
041+ #1 {main}
042+   thrown in /usr/local/src/php-5.0.3/ext/dom/tests/dom003.php on line 1
3
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/ext/iconv/tests/iconv_stream_filter.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
string(20) "1b244224332473244b24"
string(10) "41244f1b28"
string(2) "42"
string(20) "a4b3a4f3a4cba4c1a4cf"
string(10) "69636f6e76"
string(2) "0a"

Warning: fread(): iconv stream filter ("ISO-2022-JP"=>"EUC-JP"): invalid mul
tibyte sequence in %s on line %d
string(0) ""
string(0) ""
string(0) ""
---- ACTUAL OUTPUT
string(20) "1b244224332473244b24"
string(10) "41244f1b28"
string(2) "42"
string(20) "a4b3a4f3a4cba4c1a4cf"
string(10) "69636f6e76"
string(2) "0a"
string(20) "1b244f24332466245824"
string(10) "4e24421b28"
string(2) "4f"
---- FAILED

 ========================================
====================================
====
007+ string(20) "1b244f24332466245824"
008+ string(10) "4e24421b28"
009+ string(2) "4f"
007-
008- Warning: fread(): iconv stream filter ("ISO-2022-JP"=>"EUC-JP"): invali
d multibyte sequence in %s on line %d
009- string(0) ""
010- string(0) ""
011- string(0) ""
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/ext/standard/tests/array/bug29992.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
Array
(
[0] => 1
[1] => 2
[2] => 3
)
int(1)
int(2)
int(3)
int(1)
int(2)
int(3)
int(1)
int(2)
int(3)
int(1)
int(2)
int(3)
Array
(
[0] => 1
[1] => 2
[2] => 3
)
===DONE===
---- ACTUAL OUTPUT
Array
(
[0] => 1
[1] => 2
[2] => 3
)
int(1)
int(2)
int(3)
int(1)
int(2)
int(3)
int(1)
int(2)
int(3)
int(1)
int(2)
int(2)
Array
(
[0] => 1
[1] => 2
[2] => 2
)
===DONE===
---- FAILED

 ========================================
====================================
====
018+ int(2)
018- int(3)
023+     [2] => 2
023-     [2] => 3
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/ext/standard/tests/time/bug20382.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
tStamp=Wednesday 2004-10-27 17:17:17 CEST
result=Monday 2004-11-01 00:00:00 CET
wanted=Monday 2004-11-01 00:00:00 CET
---- ACTUAL OUTPUT
tStamp=Wednesday 2004-10-27 17:17:17 CEST
result=Sunday 2004-10-31 23:00:00 CET
wanted=Monday 2004-11-01 00:00:00 CET
---- FAILED

 ========================================
====================================
====
002+ result=Sunday 2004-10-31 23:00:00 CET
002- result=Monday 2004-11-01 00:00:00 CET
 ========================================
====================================
====



 ========================================
====================================
====
/usr/local/src/php-5.0.3/ext/xml/tests/bug26614.phpt
 ========================================
====================================
====

---- EXPECTED OUTPUT
CDATA
<DATA> at line 2, col 0 (byte 45)
</DATA> at line 9, col 0 (byte 90)
Comment
<DATA> at line 2, col 0 (byte 45)
</DATA> at line 9, col 0 (byte 90)
Text
<DATA> at line 2, col 0 (byte 45)
</DATA> at line 9, col 0 (byte 90)
---- ACTUAL OUTPUT
CDATA
<DATA> at line 2, col 6 (byte 9)
</DATA> at line 9, col 8 (byte 56)
Comment
<DATA> at line 2, col 6 (byte 9)
</DATA> at line 9, col 8 (byte 56)
Text
<DATA> at line 2, col 6 (byte 9)
</DATA> at line 9, col 8 (byte 56)
---- FAILED

 ========================================
====================================
====
002+ <DATA> at line 2, col 6 (byte 9)
003+ </DATA> at line 9, col 8 (byte 56)
002- <DATA> at line 2, col 0 (byte 45)
003- </DATA> at line 9, col 0 (byte 90)
005+ <DATA> at line 2, col 6 (byte 9)
006+ </DATA> at line 9, col 8 (byte 56)
005- <DATA> at line 2, col 0 (byte 45)
006- </DATA> at line 9, col 0 (byte 90)
008+ <DATA> at line 2, col 6 (byte 9)
009+ </DATA> at line 9, col 8 (byte 56)
008- <DATA> at line 2, col 0 (byte 45)
009- </DATA> at line 9, col 0 (byte 90)
 ========================================
====================================
====




 ========================================
====================================
====
BUILD ENVIRONMENT
 ========================================
====================================
====
OS:
Linux - Linux bioinfs11 2.4.21-138-smp #1 SMP Fri Oct 31 00:51:31 UTC 2003 i
686

Automake:
automake (GNU automake) 1.6.3
Written by Tom Tromey <tromey@redhat.com>.

Copyright 2002 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Autoconf:
autoconf (GNU Autoconf) 2.53
Written by David J. MacKenzie and Akim Demaille.

Copyright 2002 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Bundled Libtool:
ltmain.sh (GNU libtool) 1.4.3 (1.922.2.110 2002/10/23 01:39:54)

System Libtool:
ltmain.sh (GNU libtool) 1.4.2 (1.922.2.54 2001/09/11 03:33:37)

Compiler:
Reading specs from /usr/lib/gcc-lib/i486-suse-linux/3.2.2/specs
Configured with: ../configure --enable-threads=posix --prefix=/usr --with-lo
cal-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/share/man --li
bdir=/usr/lib --enable-languages=c,c++,f77,objc,java,ada --enable-libgcj --w
ith-gxx-include-dir=/usr/in
clude/g++ --with-slibdir=/lib --with-system-zlib --enable-shared --enable-__
cxa_atexit i486-suse-linux
Thread model: posix
gcc version 3.2.2

Bison:
bison (GNU Bison) 1.35

Copyright 1984, 1986, 1989, 1992, 2000, 2001, 2002
Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Libraries:
libcrypt.so.1 => /lib/libcrypt.so.1 (0x40025000)
libresolv.so.2 => /lib/libresolv.so.2 (0x40056000)
libm.so.6 => /lib/i686/libm.so.6 (0x40068000)
libdl.so.2 => /lib/libdl.so.2 (0x4008b000)
libnsl.so.1 => /lib/libnsl.so.1 (0x4008e000)
libz.so.1 => /lib/libz.so.1 (0x400a3000)
libclntsh.so.10.1 => /mnt/work1/oracle/product/10.1.0/db_1/lib/libclntsh.so.
10.1 (0x400b2000)
libxml2.so.2 => /usr/local/lib/libxml2.so.2 (0x40c2a000)
libpthread.so.0 => /lib/i686/libpthread.so.0 (0x40d48000)
libc.so.6 => /lib/i686/libc.so.6 (0x40d5c000)
libnnz10.so => /work1/oracle/product/10.1.0/db_1/lib/libnnz10.so (0x40e7b000
)
/lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x40000000)


User's E-mail:


 ========================================
====================================
====
PHPINFO
 ========================================
====================================
====
phpinfo()
PHP Version => 5.0.3

System => Linux bioinfs11 2.4.21-138-smp #1 SMP Fri Oct 31 00:51:31 UTC 2003
 i686
Build Date => Mar  3 2005 16:22:29
Configure Command =>  './configure' '--prefix=/usr/local/php5' '--with-apxs2
=/usr/local/apache2/bin/apxs' '--with-oci8=/mnt/work1/oracle/product/10.1.0/
db_1' '--with-libxml=/usr/local/lib'
Server API => Command Line Interface
Virtual Directory Support => disabled
Configuration File (php.ini) Path => /usr/local/php5/lib
PHP API => 20031224
PHP Extension => 20041030
Zend Extension => 220040412
Debug Build => no
Thread Safety => disabled
IPv6 Support => enabled
Registered PHP Streams => php, file, http, ftp
Registered Stream Socket Transports => tcp, udp, unix, udg


This program makes use of the Zend Scripting Language Engine:
Zend Engine v2.0.3, Copyright (c) 1998-2004 Zend Technologies


 ________________________________________
_______________________________


Configuration

PHP Core

Directive => Local Value => Master Value
allow_call_time_pass_reference => On => On
allow_url_fopen => On => On
always_populate_raw_post_data => Off => Off
arg_separator.input => & => &
arg_separator.output => & => &
asp_tags => Off => Off
auto_append_file => no value => no value
auto_globals_jit => On => On
auto_prepend_file => no value => no value
browscap => no value => no value
default_charset => no value => no value
default_mimetype => text/html => text/html
define_syslog_variables => Off => Off
disable_classes => no value => no value
disable_functions => no value => no value
display_errors => On => On
display_startup_errors => Off => Off
doc_root => no value => no value
docref_ext => no value => no value
docref_root => no value => no value
enable_dl => On => On
error_append_string => no value => no value
error_log => no value => no value
error_prepend_string => no value => no value
error_reporting => no value => no value
expose_php => On => On
extension_dir => /usr/local/php5/lib/php/extensions/no-debug-non-zts-2004103
0 => /usr/local/php5/lib/php/extensions/no-debug-non-zts-20041030
file_uploads => On => On
highlight.bg => #FFFFFF => #FFFFFF
highlight.comment => #FF8000 => #FF8000
highlight.default => #0000BB => #0000BB
highlight.html => #000000 => #000000
highlight.keyword => #007700 => #007700
highlight.string => #DD0000 => #DD0000
html_errors => Off => On
ignore_repeated_errors => Off => Off
ignore_repeated_source => Off => Off
ignore_user_abort => Off => Off
implicit_flush => On => Off
include_path => .:/usr/local/php5/lib/php => .:/usr/local/php5/lib/php
log_errors => Off => Off
log_errors_max_len => 1024 => 1024
magic_quotes_gpc => On => On
magic_quotes_runtime => Off => Off
magic_quotes_sybase => Off => Off
mail.force_extra_parameters => no value => no value
max_execution_time => 0 => 30
max_input_time => -1 => -1
open_basedir => no value => no value
output_buffering => 0 => 0
output_handler => no value => no value
post_max_size => 8M => 8M
precision => 14 => 14
register_argc_argv => On => On
register_globals => Off => Off
register_long_arrays => On => On
report_memleaks => On => On
report_zend_debug => Off => Off
safe_mode => Off => Off
safe_mode_exec_dir => /usr/local/php/bin => /usr/local/php/bin
safe_mode_gid => Off => Off
safe_mode_include_dir => no value => no value
sendmail_from => no value => no value
sendmail_path => /usr/sbin/sendmail -t -i  => /usr/sbin/sendmail -t -i
serialize_precision => 100 => 100
short_open_tag => On => On
SMTP => localhost => localhost
smtp_port => 25 => 25
sql.safe_mode => Off => Off
track_errors => Off => Off
unserialize_callback_func => no value => no value
upload_max_filesize => 2M => 2M
upload_tmp_dir => no value => no value
user_dir => no value => no value
variables_order => EGPCS => EGPCS
xmlrpc_error_number => 0 => 0
xmlrpc_errors => Off => Off
y2k_compliance => On => On
zend.ze1_compatibility_mode => Off => Off

ctype

ctype functions => enabled

dom

DOM/XML => enabled
DOM/XML API Version => 20031129
libxml Version => 2.6.17
HTML Support => enabled
XPath Support => enabled
XPointer Support => enabled
Schema Support => enabled
RelaxNG Support => enabled

iconv

iconv support => enabled
iconv implementation => glibc
iconv library version => 2.2.5

Directive => Local Value => Master Value
iconv.input_encoding => ISO-8859-1 => ISO-8859-1
iconv.internal_encoding => ISO-8859-1 => ISO-8859-1
iconv.output_encoding => ISO-8859-1 => ISO-8859-1

libxml

libXML support => active
libXML Version => 2.6.17
libXML streams => enabled

oci8

OCI8 Support => enabled
Revision => $Revision: 1.257.2.5 $
Active Persistent Links => 0
Active Links => 0
Oracle Version => 10.1
Compile-time ORACLE_HOME => /mnt/work1/oracle/product/10.1.0/db_1
Libraries Used =>
Temporary Lob support => enabled
Collections support => enabled

pcre

PCRE (Perl Compatible Regular Expressions) Support => enabled
PCRE Library Version => 4.5 01-December-2003

posix

Revision => $Revision: 1.60 $

session

Session Support => enabled
Registered save handlers => files user sqlite
Registered serializer handlers => php php_binary

Directive => Local Value => Master Value
session.auto_start => Off => Off
session.bug_compat_42 => On => On
session.bug_compat_warn => On => On
session.cache_expire => 180 => 180
session.cache_limiter => nocache => nocache
session.cookie_domain => no value => no value
session.cookie_lifetime => 0 => 0
session.cookie_path => / => /
session.cookie_secure => Off => Off
session.entropy_file => no value => no value
session.entropy_length => 0 => 0
session.gc_divisor => 100 => 100
session.gc_maxlifetime => 1440 => 1440
session.gc_probability => 1 => 1
session.hash_bits_per_character => 4 => 4
session.hash_function => 0 => 0
session.name => PHPSESSID => PHPSESSID
session.referer_check => no value => no value
session.save_handler => files => files
session.save_path => no value => no value
session.serialize_handler => php => php
session.use_cookies => On => On
session.use_only_cookies => Off => Off
session.use_trans_sid => 0 => 0

SimpleXML

Simplexml support => enabled
Revision => $Revision: 1.139.2.4 $
Schema support => enabled

SPL

SPL support => enabled
Interfaces => RecursiveIterator, SableIterator
Classes => ArrayObject, ArrayIterator, CachingIterator, CachingRecursiveIter
ator, DirectoryIterator, FilterIterator, LimitIterator, ParentIterator, Recu
rsiveDirectoryIterator, RecursiveIteratorIterator, SimpleXMLIterator

SQLite

SQLite support => enabled
PECL Module version => 2.0-dev $Id: sqlite.c,v 1.146.2.3 2004/09/26 01:41:40
 wez Exp $
SQLite Library => 2.8.14
SQLite Encoding => iso8859

Directive => Local Value => Master Value
sqlite.assoc_case => 0 => 0

standard

Regex Library => Bundled library enabled
Dynamic Library Support => enabled
Path to sendmail => /usr/sbin/sendmail -t -i

Directive => Local Value => Master Value
assert.active => 1 => 1
assert.bail => 0 => 0
assert.callback => no value => no value
assert.quiet_eval => 0 => 0
assert.warning => 1 => 1
auto_detect_line_endings => 0 => 0
date.default_latitude => 31.7667 => 31.7667
date.default_longitude => 35.2333 => 35.2333
date.sunrise_zenith => 90.83 => 90.83
date.sunset_zenith => 90.83 => 90.83
default_socket_timeout => 60 => 60
safe_mode_allowed_env_vars => PHP_ => PHP_
safe_mode_protected_env_vars => LD_LIBRARY_PATH => LD_LIBRARY_PATH
url_rewriter.tags =>  a=href,area=href,frame=src,form=,fieldse
t= => a=href,ar
ea=href,frame=src,form=,fieldset=
user_agent => no value => no value

tokenizer

Tokenizer Support => enabled

xml

XML Support => active
XML Namespace Support => active
libxml2 Version => 2.6.17

Additional Modules

Module Name

Environment

Variable => Value
LESSKEY => /etc/lesskey.bin
MANPATH => /geninf/prog/staden/man:/geninf/prog/man:/geninf/prog/pvm/man:/us
r/local/man:/usr/share/man:/usr/X11R6/man:/opt/gnome/man
INFODIR => /usr/share/info:/usr/local/info
NNTPSERVER => news
SRSDAT => /geninf/prog/srs/etc
OS_SPECIFIC => linux73
SRSINX => /geninf/prog/srs/index
HOSTNAME => bioinfs11b.wur.nl
SRSDEMO => /geninf/prog/srs/demo
SRSPERLMOD => /geninf/prog/srs/bin/linux73
CHIMERA_DIR => /geninf/prog/PHYLO/chimera/
TEST_PHP_SRCDIR => /usr/local/src/php-5.0.3
FPCHELP => /geninf/prog/UTILS/FPC
SRSSOU => /geninf/prog/srs/src
BIOINF_UPDATE => /geninf/work
INTEL_LICENSE_FILE => /geninf/prog/tools/INTEL/licenses
TERM => xterm
SHELL => /bin/sh
SRSEXE => /geninf/prog/srs/bin/linux73
ZPLTYPE => mpi
HOST => bioinfs11b
WISECONFIGDIR => /geninf/prog/ALIGN/wise2.2.0/wisecfg/
LEONDIR => /geninf/prog/ALIGN/leon/bin
MAKEFLAGS =>
JACKALDIR => /geninf/prog/STRUC/jackal/bin/jackal.dir
SSH_CLIENT => deleted
PERL5LIB => /geninf/prog/srs/bin/linux73:/geninf/prog/lib/perl5/site_perl:/g
eninf/prog/lib/perl5:/geninf/prog/lib/perl
RNAVIEW => /geninf/prog/RNAFOLD/RnamlView/RNAVIEW
SRSBREW => /geninf/prog/srs/brew
GNOME_PATH => /opt/gnome:/usr
MORE => -sl
SRSFLAGS => /geninf/prog/srs/flags
MEME_DIRECTORY => /geninf/prog/ALIGN/meme/src
QTDIR => /usr/lib/qt3
BIOINF_FASTA => /geninf/prog/fasta3
STADTABL => /geninf/prog/staden/tables
LAGAN_DIR => /geninf/prog/ALIGN/lagan
SRSWWWPERM => /geninf/prog/srs/perm
SSH_TTY => deleted
prodir => /geninf/prog/STRUC/procheck
ZPLHOME => /geninf/prog/LANG/zpl_mpi
aquaroot => @@_aqua_program_directory_@@
JRE_HOME => /usr/lib/java/jre
ZPLTARGET => x86-linux
USER => root
SRSAPPL => /geninf/prog/srs/appl
GROUP => studs
PHRED_PARAMETER_FILE => /geninf/1/prog/UTILS/PHRED/phredpar.dat
STADENROOT_2002 => /geninf/prog/staden
LS_COLORS =>  no=00:fi=00:di=01;34:ln=00;36:pi=40;33:s
o=01;35:do=01;35:bd=40;
33;01:cd=40;33;01:or=40;31:ex=00;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.ba
t=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00
;31:*.deb=00;31:*.arj=00;31
:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00
;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:*.bmp=01;35
:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.
mpg=01;35:*.pcx=01;35:*.pbm
=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;
35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.m
p3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:
SCRIPT_FILENAME =>
SUDO_USER => maartenb
ORACLE_SID => PROREP
BIOINF_TOOLS => /geninf/prog/tools
SUDO_UID => 601
GENINF_SETUP => 1
SSH_AUTH_SOCK => deleted
ORACLE_BASE => /mnt/work1/oracle/product/10.1.0
WNHOME => /geninf/prog/CLASS/wordnet
SRSWWWTMP => /geninf/prog/srs/tmp
PVM_ROOT => /geninf/prog/pvm
SRSAPI => /geninf/prog/srs/api
HOSTTYPE => i586-linux
GTAGDB => GTAGDB:/home/studs/maartenb/GTAGDB:/geninf/prog/staden/tables/GTAG
DB
BIOINF_DOC => /geninf/prog/doc
MAKELEVEL => 1
MEMSAT_DIR => /geninf/prog/STRUC/memsat/data
PAGER => /usr/bin/less
PLPLOT_LIB => /geninf/prog/share/EMBOSS
CSHEDIT => emacs
MFLAGS =>
PVM_ARCH => LINUX
SRSTST => /geninf/prog/srs/test
SRSAPPLEXE => /geninf/prog/srs/appl/bin/linux73
JDEV_HOME => /mnt/work1/oracle/product/10.1.0/db_5/jdev
MINICOM => -c on
GZIP => -9
PATH => /usr/sbin:/bin:/usr/bin:/sbin:/usr/X11R6/bin
GNOMEDIR => /opt/gnome
ZPLMPITYPE => mpich
_ => /usr/local/src/php-5.0.3/sapi/cli/php
JAVA_BINDIR => /usr/lib/java/bin
ADOBE_SVG_VIEWER_PATH => /geninf/prog/BROWSE/adobesvg-3.01
LC_COLLATE => POSIX
SRSWS => /geninf/prog/srs/srsws
EMBOSS_ROOT => /geninf/prog/share/EMBOSS
RNAMLVIEW => /geninf/prog/RNAFOLD/RnamlView
PWD => /usr/local/src/php-5.0.3
INPUTRC => /etc/inputrc
SRSPYTHMOD => /geninf/prog/srs/bin/linux73
X3DNA => /geninf/prog/RNAFOLD/X3DNA
JAVA_HOME => /usr/lib/java
DIALIGN2_DIR => /geninf/prog/ALIGN/dialign2_dir
STADENROOT => /geninf/prog/staden
THREAD_DIR => /geninf/prog/STRUC/threader
BIOINF_SCRATCH => /geninf/work/SCRATCH
LANG => en_US
SRSETC => /geninf/prog/srs/etc
TEST_PHP_EXECUTABLE => /usr/local/src/php-5.0.3/sapi/cli/php
REDIRECT_STATUS =>
SDK_HOME => /usr/lib/java
BIOINF_PHYLIP => /geninf/prog/PHYLO/phylip
MACHINE => linux
XFILESEARCHPATH => /usr/lib/X11/%L/%T/%N%C:/usr/lib/X11/%l/%T/%N%C:/usr/lib/
X11/%T/%N%C:/usr/lib/X11/%L/%T/%N:/usr/lib/X11/%l/%T/%N:/usr/lib/X11/%T/%N:/
var/X11R6/%T/%N%C:/var/X11R6/%T/%N
SRSSITE => /geninf/prog/srs/icarus/site
BLASTDB => /geninf/data/blast/
PATH_TRANSLATED =>
RASCAL => /geninf/prog/ALIGN/RASCAL/bin
SRSPRISMADATE => /geninf/prog/srs/prisma/manual
POLYBAYES_LIB => /geninf/prog/ALIGN/PolyBayes/lib
SRSICA => /geninf/prog/srs/icarus/util
EMBOSS_ACDROOT => /geninf/prog/share/EMBOSS/acd
HOME => /root
SHLVL => 4
SUDO_COMMAND => /bin/su
JDK_HOME => /usr/lib/java
CONTENT_LENGTH =>
SRSMAN => /geninf/prog/srs/www/man
OSTYPE => linux
LS_OPTIONS => -a -N --color=tty -T 0
no_proxy => localhost
SRSLION => /geninf/prog/srs/icarus/lion
WINDOWMANAGER => /usr/X11R6/bin/kde
MAFFT_BINARIES => /geninf/prog/ALIGN/mafft/binaries
VENDOR => suse
PYTHONPATH => /geninf/prog/srs/bin/linux73
BIOINF_NEWS => /geninf/prog/news
LESS => -M -I
LOGNAME => root
MACHTYPE => i686
QUERY_STRING =>
SRSDB => /geninf/prog/srs/icarus/db
PRINTER => lp
BIOINF_LOG => /geninf/prog/log
BIOINF_PHYLO => /geninf/prog/PHYLO
SRSWF => /geninf/prog/srs/icarus/workflows
ZPLCOMMLAYER => mpi
SRSOM => /geninf/prog/srs/om
SRSROOT => /geninf/prog/srs
LESSOPEN => lessopen.sh %s
BLASTMAT => /geninf/prog/blast/data/
SRSDOC => /geninf/prog/srs/www/doc
SRSOFFINX => /geninf/prog/srs/offindex
INFOPATH => /usr/share/info:/usr/local/info
BIOINF_WORK => /geninf/work
CONTENT_TYPE =>
SUDO_GID => 300
SRSRDB => /geninf/prog/srs/icarus/rdb
CC => gcc
STADLIB => /geninf/prog/staden/lib
SRSWWW => /geninf/prog/srs/www
BIOINF_PREDATOR => /geninf/prog/STRUC/predator
BIOINF_OMIM => /geninf/data/omim
ORACLE_HOME => /mnt/work1/oracle/product/10.1.0/db_1
CHICK_ACE => /geninf/data/chick/acedb/ChickAce_BAC_EST
REQUEST_METHOD =>
LESSCLOSE => lessclose.sh %s %s
SRSPRISMA => /geninf/prog/srs/prisma
FASTLIBS => /geninf/prog/fasta3/fastlibs
JAVA_ROOT => /usr/lib/java
COLORTERM => 1

PHP Variables

Variable => Value
_SERVER["LESSKEY"] => /etc/lesskey.bin
_SERVER["MANPATH"] => /geninf/prog/staden/man:/geninf/prog/man:/geninf/prog/
pvm/man:/usr/local/man:/usr/share/man:/usr/X11R6/man:/opt/gnome/man
_SERVER["INFODIR"] => /usr/share/info:/usr/local/info
_SERVER["NNTPSERVER"] => news
_SERVER["SRSDAT"] => /geninf/prog/srs/etc
_SERVER["OS_SPECIFIC"] => linux73
_SERVER["SRSINX"] => /geninf/prog/srs/index
_SERVER["HOSTNAME"] => bioinfs11b.wur.nl
_SERVER["SRSDEMO"] => /geninf/prog/srs/demo
_SERVER["SRSPERLMOD"] => /geninf/prog/srs/bin/linux73
_SERVER["CHIMERA_DIR"] => /geninf/prog/PHYLO/chimera/
_SERVER["TEST_PHP_SRCDIR"] => /usr/local/src/php-5.0.3
_SERVER["FPCHELP"] => /geninf/prog/UTILS/FPC
_SERVER["SRSSOU"] => /geninf/prog/srs/src
_SERVER["BIOINF_UPDATE"] => /geninf/work
_SERVER["INTEL_LICENSE_FILE"] => /geninf/prog/tools/INTEL/licenses
_SERVER["TERM"] => xterm
_SERVER["SHELL"] => /bin/sh
_SERVER["SRSEXE"] => /geninf/prog/srs/bin/linux73
_SERVER["ZPLTYPE"] => mpi
_SERVER["HOST"] => bioinfs11b
_SERVER["WISECONFIGDIR"] => /geninf/prog/ALIGN/wise2.2.0/wisecfg/
_SERVER["LEONDIR"] => /geninf/prog/ALIGN/leon/bin
_SERVER["MAKEFLAGS"] =>
_SERVER["JACKALDIR"] => /geninf/prog/STRUC/jackal/bin/jackal.dir
_SERVER["SSH_CLIENT"] => deleted
_SERVER["PERL5LIB"] => /geninf/prog/srs/bin/linux73:/geninf/prog/lib/perl5/s
ite_perl:/geninf/prog/lib/perl5:/geninf/prog/lib/perl
_SERVER["RNAVIEW"] => /geninf/prog/RNAFOLD/RnamlView/RNAVIEW
_SERVER["SRSBREW"] => /geninf/prog/srs/brew
_SERVER["GNOME_PATH"] => /opt/gnome:/usr
_SERVER["MORE"] => -sl
_SERVER["SRSFLAGS"] => /geninf/prog/srs/flags
_SERVER["MEME_DIRECTORY"] => /geninf/prog/ALIGN/meme/src
_SERVER["QTDIR"] => /usr/lib/qt3
_SERVER["BIOINF_FASTA"] => /geninf/prog/fasta3
_SERVER["STADTABL"] => /geninf/prog/staden/tables
_SERVER["LAGAN_DIR"] => /geninf/prog/ALIGN/lagan
_SERVER["SRSWWWPERM"] => /geninf/prog/srs/perm
_SERVER["SSH_TTY"] => deleted
_SERVER["prodir"] => /geninf/prog/STRUC/procheck
_SERVER["ZPLHOME"] => /geninf/prog/LANG/zpl_mpi
_SERVER["aquaroot"] => @@_aqua_program_directory_@@
_SERVER["JRE_HOME"] => /usr/lib/java/jre
_SERVER["ZPLTARGET"] => x86-linux
_SERVER["USER"] => root
_SERVER["SRSAPPL"] => /geninf/prog/srs/appl
_SERVER["GROUP"] => studs
_SERVER["PHRED_PARAMETER_FILE"] => /geninf/1/prog/UTILS/PHRED/phredpar.dat
_SERVER["STADENROOT_2002"] => /geninf/prog/staden
_SERVER["LS_COLORS"] =>  no=00:fi=00:di=01;34:ln=00;36:pi=40;33:s
o=01;35:do=0
 1;35:bd=40;33;01:cd=40;33;01:or=40;31:ex
=00;32:*.cmd=01;32:*.exe=01;32:*.com
=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;
31:*.rpm=00;31:*.deb=00;31:
*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00
;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:
*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.m
ov=01;35:*.mpg=01;35:*.pcx=
01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;3
5:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.aiff=00;32:*.au=00;32:*.mi
d=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:
_SERVER["SCRIPT_FILENAME"] =>
_SERVER["SUDO_USER"] => maartenb
_SERVER["ORACLE_SID"] => PROREP
_SERVER["BIOINF_TOOLS"] => /geninf/prog/tools
_SERVER["SUDO_UID"] => 601
_SERVER["GENINF_SETUP"] => 1
_SERVER["SSH_AUTH_SOCK"] => deleted
_SERVER["ORACLE_BASE"] => /mnt/work1/oracle/product/10.1.0
_SERVER["WNHOME"] => /geninf/prog/CLASS/wordnet
_SERVER["SRSWWWTMP"] => /geninf/prog/srs/tmp
_SERVER["PVM_ROOT"] => /geninf/prog/pvm
_SERVER["SRSAPI"] => /geninf/prog/srs/api
_SERVER["HOSTTYPE"] => i586-linux
_SERVER["GTAGDB"] => GTAGDB:/home/studs/maartenb/GTAGDB:/geninf/prog/staden/
tables/GTAGDB
_SERVER["BIOINF_DOC"] => /geninf/prog/doc
_SERVER["MAKELEVEL"] => 1
_SERVER["MEMSAT_DIR"] => /geninf/prog/STRUC/memsat/data
_SERVER["PAGER"] => /usr/bin/less
_SERVER["PLPLOT_LIB"] => /geninf/prog/share/EMBOSS
_SERVER["CSHEDIT"] => emacs
_SERVER["MFLAGS"] =>
_SERVER["PVM_ARCH"] => LINUX
_SERVER["SRSTST"] => /geninf/prog/srs/test
_SERVER["SRSAPPLEXE"] => /geninf/prog/srs/appl/bin/linux73
_SERVER["JDEV_HOME"] => /mnt/work1/oracle/product/10.1.0/db_5/jdev
_SERVER["MINICOM"] => -c on
_SERVER["GZIP"] => -9
_SERVER["PATH"] => /usr/sbin:/bin:/usr/bin:/sbin:/usr/X11R6/bin
_SERVER["GNOMEDIR"] => /opt/gnome
_SERVER["ZPLMPITYPE"] => mpich
_SERVER["_"] => /usr/local/src/php-5.0.3/sapi/cli/php
_SERVER["JAVA_BINDIR"] => /usr/lib/java/bin
_SERVER["ADOBE_SVG_VIEWER_PATH"] => /geninf/prog/BROWSE/adobesvg-3.01
_SERVER["LC_COLLATE"] => POSIX
_SERVER["SRSWS"] => /geninf/prog/srs/srsws
_SERVER["EMBOSS_ROOT"] => /geninf/prog/share/EMBOSS
_SERVER["RNAMLVIEW"] => /geninf/prog/RNAFOLD/RnamlView
_SERVER["PWD"] => /usr/local/src/php-5.0.3
_SERVER["INPUTRC"] => /etc/inputrc
_SERVER["SRSPYTHMOD"] => /geninf/prog/srs/bin/linux73
_SERVER["X3DNA"] => /geninf/prog/RNAFOLD/X3DNA
_SERVER["JAVA_HOME"] => /usr/lib/java
_SERVER["DIALIGN2_DIR"] => /geninf/prog/ALIGN/dialign2_dir
_SERVER["STADENROOT"] => /geninf/prog/staden
_SERVER["THREAD_DIR"] => /geninf/prog/STRUC/threader
_SERVER["BIOINF_SCRATCH"] => /geninf/work/SCRATCH
_SERVER["LANG"] => en_US
_SERVER["SRSETC"] => /geninf/prog/srs/etc
_SERVER["TEST_PHP_EXECUTABLE"] => /usr/local/src/php-5.0.3/sapi/cli/php
_SERVER["REDIRECT_STATUS"] =>
_SERVER["SDK_HOME"] => /usr/lib/java
_SERVER["BIOINF_PHYLIP"] => /geninf/prog/PHYLO/phylip
_SERVER["MACHINE"] => linux
_SERVER["XFILESEARCHPATH"] => /usr/lib/X11/%L/%T/%N%C:/usr/lib/X11/%l/%T/%N%
C:/usr/lib/X11/%T/%N%C:/usr/lib/X11/%L/%T/%N:/usr/lib/X11/%l/%T/%N:/usr/lib/
X11/%T/%N:/var/X11R6/%T/%N%C:/var/X11R6/%T/%N
_SERVER["SRSSITE"] => /geninf/prog/srs/icarus/site
_SERVER["BLASTDB"] => /geninf/data/blast/
_SERVER["PATH_TRANSLATED"] =>
_SERVER["RASCAL"] => /geninf/prog/ALIGN/RASCAL/bin
_SERVER["SRSPRISMADATE"] => /geninf/prog/srs/prisma/manual
_SERVER["POLYBAYES_LIB"] => /geninf/prog/ALIGN/PolyBayes/lib
_SERVER["SRSICA"] => /geninf/prog/srs/icarus/util
_SERVER["EMBOSS_ACDROOT"] => /geninf/prog/share/EMBOSS/acd
_SERVER["HOME"] => /root
_SERVER["SHLVL"] => 4
_SERVER["SUDO_COMMAND"] => /bin/su
_SERVER["JDK_HOME"] => /usr/lib/java
_SERVER["CONTENT_LENGTH"] =>
_SERVER["SRSMAN"] => /geninf/prog/srs/www/man
_SERVER["OSTYPE"] => linux
_SERVER["LS_OPTIONS"] => -a -N --color=tty -T 0
_SERVER["no_proxy"] => localhost
_SERVER["SRSLION"] => /geninf/prog/srs/icarus/lion
_SERVER["WINDOWMANAGER"] => /usr/X11R6/bin/kde
_SERVER["MAFFT_BINARIES"] => /geninf/prog/ALIGN/mafft/binaries
_SERVER["VENDOR"] => suse
_SERVER["PYTHONPATH"] => /geninf/prog/srs/bin/linux73
_SERVER["BIOINF_NEWS"] => /geninf/prog/news
_SERVER["LESS"] => -M -I
_SERVER["LOGNAME"] => root
_SERVER["MACHTYPE"] => i686
_SERVER["QUERY_STRING"] =>
_SERVER["SRSDB"] => /geninf/prog/srs/icarus/db
_SERVER["PRINTER"] => lp
_SERVER["BIOINF_LOG"] => /geninf/prog/log
_SERVER["BIOINF_PHYLO"] => /geninf/prog/PHYLO
_SERVER["SRSWF"] => /geninf/prog/srs/icarus/workflows
_SERVER["ZPLCOMMLAYER"] => mpi
_SERVER["SRSOM"] => /geninf/prog/srs/om
_SERVER["SRSROOT"] => /geninf/prog/srs
_SERVER["LESSOPEN"] => lessopen.sh %s
_SERVER["BLASTMAT"] => /geninf/prog/blast/data/
_SERVER["SRSDOC"] => /geninf/prog/srs/www/doc
_SERVER["SRSOFFINX"] => /geninf/prog/srs/offindex
_SERVER["INFOPATH"] => /usr/share/info:/usr/local/info
_SERVER["BIOINF_WORK"] => /geninf/work
_SERVER["CONTENT_TYPE"] =>
_SERVER["SUDO_GID"] => 300
_SERVER["SRSRDB"] => /geninf/prog/srs/icarus/rdb
_SERVER["CC"] => gcc
_SERVER["STADLIB"] => /geninf/prog/staden/lib
_SERVER["SRSWWW"] => /geninf/prog/srs/www
_SERVER["BIOINF_PREDATOR"] => /geninf/prog/STRUC/predator
_SERVER["BIOINF_OMIM"] => /geninf/data/omim
_SERVER["ORACLE_HOME"] => /mnt/work1/oracle/product/10.1.0/db_1
_SERVER["CHICK_ACE"] => /geninf/data/chick/acedb/ChickAce_BAC_EST
_SERVER["REQUEST_METHOD"] =>
_SERVER["LESSCLOSE"] => lessclose.sh %s %s
_SERVER["SRSPRISMA"] => /geninf/prog/srs/prisma
_SERVER["FASTLIBS"] => /geninf/prog/fasta3/fastlibs
_SERVER["JAVA_ROOT"] => /usr/lib/java
_SERVER["COLORTERM"] => 1
_SERVER["PHP_SELF"] =>
_SERVER["SCRIPT_NAME"] =>
_SERVER["DOCUMENT_ROOT"] =>
_SERVER["argv"] => Array
(
)

_SERVER["argc"] => 0
_ENV["LESSKEY"] => /etc/lesskey.bin
_ENV["MANPATH"] => /geninf/prog/staden/man:/geninf/prog/man:/geninf/prog/pvm
/man:/usr/local/man:/usr/share/man:/usr/X11R6/man:/opt/gnome/man
_ENV["INFODIR"] => /usr/share/info:/usr/local/info
_ENV["NNTPSERVER"] => news
_ENV["SRSDAT"] => /geninf/prog/srs/etc
_ENV["OS_SPECIFIC"] => linux73
_ENV["SRSINX"] => /geninf/prog/srs/index
_ENV["HOSTNAME"] => bioinfs11b.wur.nl
_ENV["SRSDEMO"] => /geninf/prog/srs/demo
_ENV["SRSPERLMOD"] => /geninf/prog/srs/bin/linux73
_ENV["CHIMERA_DIR"] => /geninf/prog/PHYLO/chimera/
_ENV["TEST_PHP_SRCDIR"] => /usr/local/src/php-5.0.3
_ENV["FPCHELP"] => /geninf/prog/UTILS/FPC
_ENV["SRSSOU"] => /geninf/prog/srs/src
_ENV["BIOINF_UPDATE"] => /geninf/work
_ENV["INTEL_LICENSE_FILE"] => /geninf/prog/tools/INTEL/licenses
_ENV["TERM"] => xterm
_ENV["SHELL"] => /bin/sh
_ENV["SRSEXE"] => /geninf/prog/srs/bin/linux73
_ENV["ZPLTYPE"] => mpi
_ENV["HOST"] => bioinfs11b
_ENV["WISECONFIGDIR"] => /geninf/prog/ALIGN/wise2.2.0/wisecfg/
_ENV["LEONDIR"] => /geninf/prog/ALIGN/leon/bin
_ENV["MAKEFLAGS"] =>
_ENV["JACKALDIR"] => /geninf/prog/STRUC/jackal/bin/jackal.dir
_ENV["SSH_CLIENT"] => deleted
_ENV["PERL5LIB"] => /geninf/prog/srs/bin/linux73:/geninf/prog/lib/perl5/site
_perl:/geninf/prog/lib/perl5:/geninf/prog/lib/perl
_ENV["RNAVIEW"] => /geninf/prog/RNAFOLD/RnamlView/RNAVIEW
_ENV["SRSBREW"] => /geninf/prog/srs/brew
_ENV["GNOME_PATH"] => /opt/gnome:/usr
_ENV["MORE"] => -sl
_ENV["SRSFLAGS"] => /geninf/prog/srs/flags
_ENV["MEME_DIRECTORY"] => /geninf/prog/ALIGN/meme/src
_ENV["QTDIR"] => /usr/lib/qt3
_ENV["BIOINF_FASTA"] => /geninf/prog/fasta3
_ENV["STADTABL"] => /geninf/prog/staden/tables
_ENV["LAGAN_DIR"] => /geninf/prog/ALIGN/lagan
_ENV["SRSWWWPERM"] => /geninf/prog/srs/perm
_ENV["SSH_TTY"] => deleted
_ENV["prodir"] => /geninf/prog/STRUC/procheck
_ENV["ZPLHOME"] => /geninf/prog/LANG/zpl_mpi
_ENV["aquaroot"] => @@_aqua_program_directory_@@
_ENV["JRE_HOME"] => /usr/lib/java/jre
_ENV["ZPLTARGET"] => x86-linux
_ENV["USER"] => root
_ENV["SRSAPPL"] => /geninf/prog/srs/appl
_ENV["GROUP"] => studs
_ENV["PHRED_PARAMETER_FILE"] => /geninf/1/prog/UTILS/PHRED/phredpar.dat
_ENV["STADENROOT_2002"] => /geninf/prog/staden
_ENV["LS_COLORS"] =>  no=00:fi=00:di=01;34:ln=00;36:pi=40;33:s
o=01;35:do=01;3
 5:bd=40;33;01:cd=40;33;01:or=40;31:ex=00
;32:*.cmd=01;32:*.exe=01;32:*.com=01
;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:
*.rpm=00;31:*.deb=00;31:*.a
rj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31
:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:*.b
mp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=
01;35:*.mpg=01;35:*.pcx=01;
35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*
.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.aiff=00;32:*.au=00;32:*.mid=0
0;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:
_ENV["SCRIPT_FILENAME"] =>
_ENV["SUDO_USER"] => maartenb
_ENV["ORACLE_SID"] => PROREP
_ENV["BIOINF_TOOLS"] => /geninf/prog/tools
_ENV["SUDO_UID"] => 601
_ENV["GENINF_SETUP"] => 1
_ENV["SSH_AUTH_SOCK"] => deleted
_ENV["ORACLE_BASE"] => /mnt/work1/oracle/product/10.1.0
_ENV["WNHOME"] => /geninf/prog/CLASS/wordnet
_ENV["SRSWWWTMP"] => /geninf/prog/srs/tmp
_ENV["PVM_ROOT"] => /geninf/prog/pvm
_ENV["SRSAPI"] => /geninf/prog/srs/api
_ENV["HOSTTYPE"] => i586-linux
_ENV["GTAGDB"] => GTAGDB:/home/studs/maartenb/GTAGDB:/geninf/prog/staden/tab
les/GTAGDB
_ENV["BIOINF_DOC"] => /geninf/prog/doc
_ENV["MAKELEVEL"] => 1
_ENV["MEMSAT_DIR"] => /geninf/prog/STRUC/memsat/data
_ENV["PAGER"] => /usr/bin/less
_ENV["PLPLOT_LIB"] => /geninf/prog/share/EMBOSS
_ENV["CSHEDIT"] => emacs
_ENV["MFLAGS"] =>
_ENV["PVM_ARCH"] => LINUX
_ENV["SRSTST"] => /geninf/prog/srs/test
_ENV["SRSAPPLEXE"] => /geninf/prog/srs/appl/bin/linux73
_ENV["JDEV_HOME"] => /mnt/work1/oracle/product/10.1.0/db_5/jdev
_ENV["MINICOM"] => -c on
_ENV["GZIP"] => -9
_ENV["PATH"] => /usr/sbin:/bin:/usr/bin:/sbin:/usr/X11R6/bin
_ENV["GNOMEDIR"] => /opt/gnome
_ENV["ZPLMPITYPE"] => mpich
_ENV["_"] => /usr/local/src/php-5.0.3/sapi/cli/php
_ENV["JAVA_BINDIR"] => /usr/lib/java/bin
_ENV["ADOBE_SVG_VIEWER_PATH"] => /geninf/prog/BROWSE/adobesvg-3.01
_ENV["LC_COLLATE"] => POSIX
_ENV["SRSWS"] => /geninf/prog/srs/srsws
_ENV["EMBOSS_ROOT"] => /geninf/prog/share/EMBOSS
_ENV["RNAMLVIEW"] => /geninf/prog/RNAFOLD/RnamlView
_ENV["PWD"] => /usr/local/src/php-5.0.3
_ENV["INPUTRC"] => /etc/inputrc
_ENV["SRSPYTHMOD"] => /geninf/prog/srs/bin/linux73
_ENV["X3DNA"] => /geninf/prog/RNAFOLD/X3DNA
_ENV["JAVA_HOME"] => /usr/lib/java
_ENV["DIALIGN2_DIR"] => /geninf/prog/ALIGN/dialign2_dir
_ENV["STADENROOT"] => /geninf/prog/staden
_ENV["THREAD_DIR"] => /geninf/prog/STRUC/threader
_ENV["BIOINF_SCRATCH"] => /geninf/work/SCRATCH
_ENV["LANG"] => en_US
_ENV["SRSETC"] => /geninf/prog/srs/etc
_ENV["TEST_PHP_EXECUTABLE"] => /usr/local/src/php-5.0.3/sapi/cli/php
_ENV["REDIRECT_STATUS"] =>
_ENV["SDK_HOME"] => /usr/lib/java
_ENV["BIOINF_PHYLIP"] => /geninf/prog/PHYLO/phylip
_ENV["MACHINE"] => linux
_ENV["XFILESEARCHPATH"] => /usr/lib/X11/%L/%T/%N%C:/usr/lib/X11/%l/%T/%N%C:/
usr/lib/X11/%T/%N%C:/usr/lib/X11/%L/%T/%N:/usr/lib/X11/%l/%T/%N:/usr/lib/X11
/%T/%N:/var/X11R6/%T/%N%C:/var/X11R6/%T/%N
_ENV["SRSSITE"] => /geninf/prog/srs/icarus/site
_ENV["BLASTDB"] => /geninf/data/blast/
_ENV["PATH_TRANSLATED"] =>
_ENV["RASCAL"] => /geninf/prog/ALIGN/RASCAL/bin
_ENV["SRSPRISMADATE"] => /geninf/prog/srs/prisma/manual
_ENV["POLYBAYES_LIB"] => /geninf/prog/ALIGN/PolyBayes/lib
_ENV["SRSICA"] => /geninf/prog/srs/icarus/util
_ENV["EMBOSS_ACDROOT"] => /geninf/prog/share/EMBOSS/acd
_ENV["HOME"] => /root
_ENV["SHLVL"] => 4
_ENV["SUDO_COMMAND"] => /bin/su
_ENV["JDK_HOME"] => /usr/lib/java
_ENV["CONTENT_LENGTH"] =>
_ENV["SRSMAN"] => /geninf/prog/srs/www/man
_ENV["OSTYPE"] => linux
_ENV["LS_OPTIONS"] => -a -N --color=tty -T 0
_ENV["no_proxy"] => localhost
_ENV["SRSLION"] => /geninf/prog/srs/icarus/lion
_ENV["WINDOWMANAGER"] => /usr/X11R6/bin/kde
_ENV["MAFFT_BINARIES"] => /geninf/prog/ALIGN/mafft/binaries
_ENV["VENDOR"] => suse
_ENV["PYTHONPATH"] => /geninf/prog/srs/bin/linux73
_ENV["BIOINF_NEWS"] => /geninf/prog/news
_ENV["LESS"] => -M -I
_ENV["LOGNAME"] => root
_ENV["MACHTYPE"] => i686
_ENV["QUERY_STRING"] =>
_ENV["SRSDB"] => /geninf/prog/srs/icarus/db
_ENV["PRINTER"] => lp
_ENV["BIOINF_LOG"] => /geninf/prog/log
_ENV["BIOINF_PHYLO"] => /geninf/prog/PHYLO
_ENV["SRSWF"] => /geninf/prog/srs/icarus/workflows
_ENV["ZPLCOMMLAYER"] => mpi
_ENV["SRSOM"] => /geninf/prog/srs/om
_ENV["SRSROOT"] => /geninf/prog/srs
_ENV["LESSOPEN"] => lessopen.sh %s
_ENV["BLASTMAT"] => /geninf/prog/blast/data/
_ENV["SRSDOC"] => /geninf/prog/srs/www/doc
_ENV["SRSOFFINX"] => /geninf/prog/srs/offindex
_ENV["INFOPATH"] => /usr/share/info:/usr/local/info
_ENV["BIOINF_WORK"] => /geninf/work
_ENV["CONTENT_TYPE"] =>
_ENV["SUDO_GID"] => 300
_ENV["SRSRDB"] => /geninf/prog/srs/icarus/rdb
_ENV["CC"] => gcc
_ENV["STADLIB"] => /geninf/prog/staden/lib
_ENV["SRSWWW"] => /geninf/prog/srs/www
_ENV["BIOINF_PREDATOR"] => /geninf/prog/STRUC/predator
_ENV["BIOINF_OMIM"] => /geninf/data/omim
_ENV["ORACLE_HOME"] => /mnt/work1/oracle/product/10.1.0/db_1
_ENV["CHICK_ACE"] => /geninf/data/chick/acedb/ChickAce_BAC_EST
_ENV["REQUEST_METHOD"] =>
_ENV["LESSCLOSE"] => lessclose.sh %s %s
_ENV["SRSPRISMA"] => /geninf/prog/srs/prisma
_ENV["FASTLIBS"] => /geninf/prog/fasta3/fastlibs
_ENV["JAVA_ROOT"] => /usr/lib/java
_ENV["COLORTERM"] => 1

PHP License
This program is free software; you can redistribute it and/or modify
it under the terms of the PHP License as published by the PHP Group
and included in the distribution in the file:  LICENSE

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

If you did not receive a copy of the PHP license, or have any
questions about PHP licensing, please contact license@php.net.